PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016472433.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 423aa    MW: 45941.6 Da    PI: 6.8786
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016472433.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.52e-3329155389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........................ssssa 70 
                     g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++a++ai+el ++                           s    
  XP_016472433.1  29 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAQAAIDELEELppwkpttgpitnsanldqekkeqkenfS---- 119
                     89*************************************************************9988876655333333222211111110.... PP

             TCP  71 seceaesssssasnsssg.................................k 89 
                                +     +                                 +
  XP_016472433.1 120 -----------T-----QqnavnvsiggssnkremimlgnesearvlhqtnS 155
                     ...........1.....11122344444433444444444443333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-3029159IPR005333Transcription factor, TCP
PROSITE profilePS5136933.6213088IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGTSSRFGLR NTGGEIVEVQ GGHIIRSIGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AQAAIDELEE LPPWKPTTGP ITNSANLDQE KKEQKENFST  120
QQNAVNVSIG GSSNKREMIM LGNESEARVL HQTNSGNSSG DNGNASFLPQ SLDSDTIADT  180
IKSFFPVGGS NESSSSSAMQ FQSFQEHNLL SRTSNHSQDL RLSLQSFQDP ILLHHQNQQA  240
HHTEQEQTHF QASNFFNGST QLGFDASGWS LSEHQQQPVE LGRVQRLAAA RAGRDSTGLA  300
LCGGAVAGAA GGYLFNSPPA PPLLQQLFGQ NQFFSQRGPL QSSYSPSIRA WIDPSAIAIA  360
TADPIHHHQA VLPMYSTSIS GIGFASELGG FSGFRIPARI QGEIEEHDGI SDKPSSASSD  420
SRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754516e-85HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785152.10.0PREDICTED: transcription factor TCP4
RefseqXP_016472433.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-106TCP4_ARATH; Transcription factor TCP4
TrEMBLM1B8S20.0M1B8S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000397860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-90TCP family protein